Prof. Dr. Thomas Ludwig

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• Scientific Computing: Performance and Efficiency in Climate Models (Sandra Schröder, Michael Kuhn, Nathanael Hübbe, Julian Kunkel, Timo Minartz, Petra Nerge, Florens Wasserfall, Thomas Ludwig), In PDP 2012 – Work in Progress, IEEE, PDP 2012, Munich Network Management Team, Garching, Germany, 2012
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• Visualization of MPI(-IO) Datatypes (Julian Kunkel, Thomas Ludwig), In ParCo 2011, IOS Press (Amsterdam, New York, Tokio), ParCo 2011, University of Ghent, ELIS Department, Ghent, Belgium, will be published in 2012
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• Tracing and Visualization of Energy-Related Metrics (Timo Minartz, Julian M. Kunkel, Thomas Ludwig), HPPAC 2012, Shanghai, China, will be published in 2012
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• Optimizations for Two-Phase Collective I/O (Michael Kuhn, Julian Kunkel, Yuichi Tsujita, Hidetaka Muguruma, Thomas Ludwig), In ParCo 2011, IOS Press (Amsterdam, New York, Tokio), ParCo 2011, University of Ghent, ELIS Department, Ghent, Belgium, will be published in 2012
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• eeClust: Energy-Efficient Cluster Computing (Timo Minartz, Daniel Molka, Michael Knobloch, Stephan Krempel, Thomas Ludwig, Wolfgang E. Nagel, Bernd Mohr, Hugo Falter), In Competence in High Performance Computing 2010, pp. 111–124, Springer Berlin Heidelberg (Heidelberg), CiHPC 2010, Schwetzingen, Germany, ISBN: 978-3-642-24025-6, 2012
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• Simulating Application and System Interaction with PIOsimHD (Julian Kunkel, Thomas Ludwig), In PDP 2012 – Work in Progress, IEEE, PDP 2012, Munich Network Management Team, Garching, Germany, 2012
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• Evaluating the Influence of File System Interfaces and Semantics on I/O Throughput in High Performance Computing (Christina Janssen, Michael Kuhn, Thomas Ludwig), In PDP 2012 – Work in Progress, IEEE, PDP 2012, Munich Network Management Team, Garching, Germany, 2012
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• Tool Environments to Measure Power Consumption and Computational Performance (Timo Minartz, Daniel Molka, Julian Kunkel, Michael Knobloch, Michael Kuhn, Thomas Ludwig), In Handbook of Energy-Aware and Green Computing (Ishfaq Ahmad, Sanjay Ranka), Chapters: 31, pp. 709–743, Chapman and Hall/CRC Press Taylor and Francis Group (6000 Broken Sound Parkway NW, Boca Raton, FL 33487), ISBN: 978-1-4398-5040-4, 2012
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• IOPm – Modeling the I/O Path with a Functional Representation of Parallel File System and Hardware Architecture (Julian Kunkel, Thomas Ludwig), In PDP 2012, IEEE, PDP 2012, Munich Network Management Team, Garching, Germany, 2012
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• Simulation-Aided Performance Evaluation of Server-Side Input/Output Optimizations (Michael Kuhn, Julian Kunkel, Thomas Ludwig), In PDP 2012, IEEE, PDP 2012, Munich Network Management Team, Garching, Germany, 2012
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• Poster: eeClust - Energy-Efficient Cluster Computing (Michael Knobloch, Timo Minartz, Daniel Molka, Stephan Krempel, Thomas Ludwig, Bernd Mohr), Seattle, USA, Supercomputing Conference, 2011-11-15
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• Managing Hardware Power Saving Modes for High Performance Computing (Timo Minartz, Michael Knobloch, Thomas Ludwig, Bernd Mohr), In Green Computing Conference and Workshops (IGCC), 2011 International, pp. 1–8, IGCC, Orlando, Florida, USA, ISBN: 978-1-4577-1222-7, 2011
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• Performance Characteristics of Global High-Resolution Ocean (MPIOM) and Atmosphere (ECHAM6) Models on Large-Scale Multicore Cluster (Panagiotis Adamidis, Irina Fast, Thomas Ludwig), In Parallel Computing Technologies - 11th International Conference, PaCT 2011, Kazan, Russia, September 19-23, 2011. Proceedings, Lecture Notes in Computer Science (6873), pp. 390–403, (Editors: Victor Malyshkin), Springer, PaCT, Kazan, Russia, ISBN: 978-3-642-23177-3, 2011
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• Towards an Energy-Aware Scientific I/O Interface – Stretching the ADIOS Interface to Foster Performance Analysis and Energy Awareness (Julian Kunkel, Timo Minartz, Michael Kuhn, Thomas Ludwig), In Computer Science - Research and Development, Series: 1, (Editors: Thomas Ludwig), Springer (Berlin / Heidelberg, Germany), 2011
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• Classification of network computers based on distributed of ICMP-echo round-trip times (Julian Kunkel, Jan C. Neddermeyer, Thomas Ludwig), Research Papers (1), Staats- und Universitätsbibliothek Hamburg (Carl von Ossietzky, Von-Melle-Park 3, 20146 Hamburg), 2010-09-28
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• Poster: Benchmarking Application I/O in the Community (Julian Kunkel, Olga Mordvinova, Dennis Runz, Michael Kuhn, Thomas Ludwig), Hamburg, Germany, International Supercomputing Conference, 2010-06-01
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• Poster: Simulation of Cluster Power Consumption and Energy-to-Solution (Timo Minartz, Julian Kunkel, Thomas Ludwig), Passau, Germany, International Conference on Energy-Efficient Computing and Networking, 2010-04-14
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• From experimental setup to bioinformatics: an RNAi screening platform to identify host factors involved in HIV-1 replication (Kathleen Börner, Johannes Hermle, Christoph Sommer, Nigel P. Brown, Bettina Knapp, Bärbel Glass, Julian Kunkel, Gloria Torralba, Jürgen Reymann, Nina Beil, Jürgen Beneke, Rainer Pepperkok, Reinhard Schneider, Thomas Ludwig, Michael Hausmann, Fred Hamprecht, Holger Erfle, Lars Kaderali, Hans-Georg Kräusslich, Maik J. Lehmann), In Biotechnology Journal, Series: 5-1, pp. 39–49, WILEY-VCH (Weinheim, Germany), ISSN: 1860-7314, 2010-01
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• Collecting Energy Consumption of Scientific Data (Julian Kunkel, Olga Mordvinova, Michael Kuhn, Thomas Ludwig), In Computer Science - Research and Development, Series: 3, pp. 1–9, (Editors: Thomas Ludwig), Springer (Berlin / Heidelberg, Germany), ISSN: 1865-2034, 2010
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• I/O Benchmarking of Data Intensive Applications (Olga Mordvinova, Thomas Ludwig, Christian Bartholomä), In Problems in Programming, Series: 2-3, pp. 107–115, National Academy of Sciences of Ukraine, ISSN: 1727-4907, 2010
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• I/O Performance Evaluation with Parabench – Programmable I/O Benchmark (Olga Mordvinova, Dennis Runz, Julian Kunkel, Thomas Ludwig), In Procedia Computer Science, Series: 1-1, pp. 2119–2128, Elsevier B.V (Amsterdam, Netherlands), ISSN: 1877-0509, 2010
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• Simulation of power consumption of energy efficient cluster hardware (Timo Minartz, Julian Kunkel, Thomas Ludwig), In Computer Science - Research and Development, Series: 3, pp. 165–175, (Editors: Thomas Ludwig), Springer (Berlin / Heidelberg, Germany), ISSN: 1865-2034, 2010
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• Tracing Internal Communication in MPI and MPI-I/O (Julian Kunkel, Yuichi Tsujita, Olga Mordvinova, Thomas Ludwig), In International Conference on Parallel and Distributed Computing, Applications and Technologies, PDCAT, pp. 280–286, IEEE Computer Society (Washington, DC, USA), PDCAT-09, Hiroshima University, Higashi Hiroshima, Japan, ISBN: 978-0-7695-3914-0, 2009-12-29
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• USB Flash Drives as an Energy Efficiency Storage Alternative (Olga Mordvinova, Julian Kunkel, Christian Baun, Thomas Ludwig, Marcel Kunze), In Proceedings of the 10th IEEE/ACM International Conference on Grid Computing, pp. 175–182, IEEE Computer Society (Washington, DC, USA), GRID-09, IEEE/ACM, Banff, Alberta, Canada, ISBN: 978-1-4244-5148-7, 2009-10
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• Small-file Access in Parallel File Systems (Philip Carns, Sam Lang, Robert Ross, Murali Vilayannur, Julian Kunkel, Thomas Ludwig), In IPDPS '09: Proceedings of the 2009 IEEE International Symposium on Parallel and Distributed Processing, pp. 1–11, IEEE Computer Society (Washington, DC, USA), IPDPS-09, University of Rome, Rome, Italy, ISBN: 978-1-4244-3751-1, 2009
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• A Strategy for Cost Efficient Distributed Data Storage for In-memory OLAP (Olga Mordvinova, Oleksandr Shepil, Thomas Ludwig, Andrew Ross), In Proceedings of the IADIS International Conference Applied Computing 2009 (1), pp. 109–117, IADIS Press (Algarve, Portugal), IADIS-09, International Association for Development of the Information Society, Rome, Italy, ISBN: 978-972-8924-97-3, 2009
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• Using Non-blocking I/O Operations in High Performance Computing to Reduce Execution Times (David Buettner, Julian Kunkel, Thomas Ludwig), In Proceedings of the 16th European PVM/MPI Users' Group Meeting on Recent Advances in Parallel Virtual Machine and Message Passing Interface, pp. 134–142, Springer-Verlag (Berlin, Heidelberg), EuroPVM/MPI-09, CSC - IT, Espoo, Finland, ISBN: 978-3-642-03769-6, 2009
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• Dynamic file system semantics to enable metadata optimizations in PVFS (Michael Kuhn, Julian Kunkel, Thomas Ludwig), In Concurrency and Computation: Practice and Experience, Series: 21-14, pp. 1775–1788, John Wiley and Sons Ltd. (Chichester, UK), ISSN: 1532-0626, 2009
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• Poster: Data Storage and Processing for High Throughput RNAi Screening (Julian Kunkel, Thomas Ludwig, M. Hemberger, G. Torralba, E. Schmitt, M. Hausmann, V. Lindenstruth, N. Brown, R. Schneider), Heidelberg, Germany, German Symposium on Systems Biology 2009, 2009
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• Directory-Based Metadata Optimizations for Small Files in PVFS (Michael Kuhn, Julian Kunkel, Thomas Ludwig), In Euro-Par '08: Proceedings of the 14th international Euro-Par conference on Parallel Processing, pp. 90–99, Springer-Verlag (Berlin, Heidelberg), Euro-Par-08, University of Las Palmas de Gran Canaria, Las Palmas de Gran Canaria, Spain, ISBN: 978-3-540-85450-0, 2008
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• Bottleneck Detection in Parallel File Systems with Trace-Based Performance Monitoring (Julian Kunkel, Thomas Ludwig), In Euro-Par '08: Proceedings of the 14th international Euro-Par conference on Parallel Processing, pp. 212–221, Springer-Verlag (Berlin, Heidelberg), Euro-Par-08, University of Las Palmas de Gran Canaria, Las Palmas de Gran Canaria, Spain, ISBN: 978-3-540-85450-0, 2008
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• Smart Carpet: A Footstep Tracking Interface (Domnic Savio, Thomas Ludwig), In Proceedings of the 21st International Conference on Advanced Information Networking and Applications Workshops (2), pp. 754–760, IEEE Computer Society (Washington, DC, USA), AINAW-07, IEEE, Niagara Falls, Ontario, Canada, ISBN: 978-0-7695-2847-2, 2007
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• Analysis of the MPI-IO Optimization Levels with the PIOViz Jumpshot Enhancement (Thomas Ludwig, Stephan Krempel, Michael Kuhn, Julian Kunkel, Christian Lohse), In Recent Advances in Parallel Virtual Machine and Message Passing Interface, Lecture Notes in Computer Science (4757), pp. 213–222, (Editors: Franck Cappello, Thomas Hérault, Jack Dongarra), Springer (Berlin / Heidelberg, Germany), EuroPVM/MPI-07, Institut national de recherche en informatique et automatique, Paris, France, ISBN: 978-3-540-75415-2, 2007
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• Performance Evaluation of the PVFS2 Architecture (Julian Kunkel, Thomas Ludwig), In PDP '07: Proceedings of the 15th Euromicro International Conference on Parallel, Distributed and Network-Based Processing, pp. 509–516, IEEE Computer Society (Washington, DC, USA), PDP-07, Euromicro, Napoli, Italy, ISBN: 0-7695-2784-1, 2007
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• Tracing the MPI-IO Calls' Disk Accesses (Thomas Ludwig, Stephan Krempel, Julian Kunkel, Frank Panse, Dulip Withanage), In Recent Advances in Parallel Virtual Machine and Message Passing Interface, Lecture Notes in Computer Science (4192), pp. 322–330, (Editors: Bernd Mohr, Jesper Larsson Träff, Joachim Worringen, Jack Dongarra), Springer (Berlin / Heidelberg, Germany), EuroPVM/MPI-06, C&C Research Labs, NEC Europe Ltd., and the Research Centre Jülich, Bonn, Germany, ISBN: 3-540-39110-X, 2006
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• Hint Controlled Distribution with Parallel File Systems (Hipolito Vasquez, Thomas Ludwig), In Recent Advances in Parallel Virtual Machine and Message Passing Interface (3666), pp. 110–118, Springer (Berlin / Heidelberg, Germany), EuroPVM/MPI-05, Sorrento, Italy, ISBN: 978-3-540-29009-4, 2005
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• A Fast Program for Phylogenetic Tree Inference with Maximum Likelihood (Alexandros P. Stamatakis, Thomas Ludwig, Harald Meier), In High Performance Computing in Science and Engineering, pp. 273–283, (Editors: Siegfried Wagner, Werner Hanke, Arndt Bode, Franz Durst), Springer (Berlin / Heidelberg, Germany), ISBN: 978-3-540-26657-0, 2004-05
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• Parallel Inference of a 10.000-taxon Phylogeny with Maximum Likelihood (Alexandros P. Stamatakis, Thomas Ludwig, Harald Meier), In Euro-Par 2004 Parallel Processing, Lecture Notes in Computer Science (3149), pp. 997–1004, (Editors: Marco Danelutto, Marco Vanneschi, Domenico Laforenza), Springer (Berlin / Heidelberg, Germany), Euro-Par-04, University of Pisa and Institute of Information Science and Technologies (ISTI-CNR), Pisa, Italy, 2004
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• New Fast and Accurate Heuristics for Inference of Large Phylogenetic Trees (Alexandros P. Stamatakis, Thomas Ludwig, Harald Meier), In Proceedings of 18th IEEE/ACM International Parallel and Distributed Processing Symposium, pp. 193, IEEE Computer Society (Washington, DC, USA), IPDPS-04, University of New Mexico, Santa Fe, New Mexico, ISBN: 0-7695-2132-0, 2004
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• Phylogenies with Statistical Methods: Problems & Solutions (Alexandros P. Stamatakis, Thomas Ludwig, Harald Meier), In Proceedings of 4th International Conference on Bioinformatics and Genome Regulation and Structure, pp. 229–233, BGRS-04, Novosibirsk, Russia, 2004
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• Research Trends in High Performance Parallel Input/Output for Cluster Environments (Thomas Ludwig), In Proceedings of the 4th International Scientific and Practical Conference on Programming, pp. 274–281, UkrPROG-04, National Academy of Sciences of Ukraine, Kiev, Ukraine, 2004
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• Helics - ein Rechner der Superklasse (Peter Bastian, Thomas Ludwig), In Ruperto Carola, Series: 3, pp. 4–7, Universitätsverlag C. Winter (Heidelberg), ISSN: 0035-998 X, 2004
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• A Fast Program for Maximum Likelihood-based Inferrence of Large Phylogenetic Trees (Alexandros P. Stamatakis, Thomas Ludwig, Harald Meier), In Proceedings of the 2004 ACM symposium on Applied computing, pp. 197–201, ACM (New York, USA), SAC-04, University of Cyprus, Nicosia, Cyprus, ISBN: 1-58113-812-1, 2004
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• DAxML: A Program for Distributed Computation of Phylogenetic Trees Based on Load Managed CORBA (Alexandros Stamatakis, Markus Lindermeier, Michael Ott, Thomas Ludwig, Harald Meier), In Parallel Computing Technologies, Lecture Notes in Computer Science (2763), pp. 538–548, (Editors: Victor Malyshkin), Springer (Berlin / Heidelberg, Germany), PaCT-03, Nizhni Novgorod State University and Russian Academy of Sciences (Academgorodok, Novosibirsk), Nizhni Novgorod, Russia, 2003
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• Phylogenetic tree inference on PC architectures with AxML/PAxML (Alexandros P. Stamatakis, Thomas Ludwig), In Proceedings of the International Parallel and Distributed Processing Symposium, pp. 8, IEEE Computer Society (Washington, DC, USA), IPDPS-03, University of Nice, Nice, France, ISBN: 0-7695-1926-1, 2003
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• Monitoring concepts for parallel systems: an evolution towards interoperable tool environments (Roland Wismüller, Thomas Ludwig, Wolfgang Karl, Arndt Bode), In On-line monitoring systems and computer tool interoperability (Thomas Ludwig, Barton Miller), pp. 1–21, Nova Science Publishers, Inc. (Commack, NY, USA), ISBN: 1-59033-888-X, 2003
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• On-line monitoring systems and computer tool interoperability (Thomas Ludwig, Barton Miller), Nova Science Publishers, Inc. (Commack, NY, USA), ISBN: 1-59033-888-X, 2003
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• Adapting PAxML to the Hitachi SR8000-F1 Supercomputer (Alexandros Stamatakis, Thomas Ludwig, Harald Meier), In High Performance Computing in Science and Engineering (Siegfried Wagner, Werner Hanke, Arndt Bode, Franz Durst), pp. 453–466, Springer (Berlin / Heidelberg, Germany), 2002
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• Efficiently building on-line tools for distributed heterogeneous environments (Günther Rackl, Thomas Ludwig, Markus Lindermeier, Alexandros Stamatakis), In Scientific Programming, Series: 10 (1), pp. 67–74, IOS Press (Amsterdam, The Netherlands), ISSN: 1058-9244, 2002
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• AxML: a fast program for sequential and parallel phylogenetic tree calculations based on the maximum likelihood method (Alexandros P. Stamatakis, Thomas Ludwig, Harald Meier, Marty J. Wolf), In Proceedings of 1. IEEE Bioinformatics Conference, pp. 21–28, IEEE Computer Society (Washington, DC, USA), CSB-02, Stanford University, Palo Alto, California, USA, ISBN: 0-7695-1653-X, 2002
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• Accelerating Parallel Maximum Likelihood-based Phylogenetic Tree Calculations using Subtree Equality Vectors (Alexandros P. Stamatakis, Thomas Ludwig, Harald Meier, Marty J. Wolf), In Proceedings of the Supercomputing Conference 2002, pp. 40, IEEE Computer Society (Washington, DC, USA), sc-02, IEEE/ACM, Baltimore, Maryland, USA, ISBN: 0-7695-1524-X, 2002
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• Efficiently Building On-Line Tools for Distributed Heterogeneous Environments (Günther Rackl, Thomas Ludwig, Markus Lindermeier, Alexandros Stamatakis), In Proceedings of the International Workshop on Performance-Oriented Application Development for Distributed Architectures, Scientific Programming (10-1), pp. 67–74, IOS Press (Amsterdam, The Netherlands), PADDA-01, Technical University Munich, Munich, Germany, ISSN: 1058-9244, 2002
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• A methodology for efficiently developing on-line tools for heterogeneous middleware (Thomas Ludwig, Günther Rackl), In Proceedings of the 34th Annual Hawaii International Conference on System Sciences, pp. 10, IEEE Computer Society (Washington, DC, USA), HICSS-34, University of Hawaii, Island of Maui, Hawaii, USA, ISBN: 0-7695-0981-9, 2001
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• EveMan - a Mobile Time and Space Organisation System for the Palm Computing Platform (Andreas Krause, Thomas Ludwig), In ITG-Fachbericht 168, VDE Verlag (Berlin, Germany), APC-01, Munich, Germany, 2001
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• Tool Environments in CORBA-Based Medical High Performance Computing (Thomas Ludwig, Markus Lindermeier, Alexandros Stamatakis, Günther Rackl), In Parallel Computing Technologies, Lecture Notes in Computer Science (2127), pp. 447–455, (Editors: Victor Malyshkin), Springer (Berlin / Heidelberg, Germany), PaCT-01, Institute of Computational Mathematics and Mathematical Geophysics of the Russian Academy of Sciences (Novosibirsk), Novosibirsk, Russia, 2001
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• Effiziente Scheduling-Algorithmen für datenparallele Anwendungen der funktionellen medizinischen Bildgebung auf NOWs (Frank Munz, Thomas Ludwig, Arndt Bode, Sibylle Ziegler, Markus Schwaiger), In Bildverarbeitung für die Medizin, Informatik aktuell, pp. 403–407, (Editors: Alexander Horsch, Thomas Lehmann), Springer (Berlin / Heidelberg, Germany), BVM-00, Technical University Munich, Munich, Germany, ISBN: 3-540-67123-4, 2000
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• Interoperable Run Time Tools for Distributed Systems - A Case Study (Roland Wismüller, Thomas Ludwig), In The Journal of Supercomputing, Series: 17-3, pp. 277–289, Springer (Berlin / Heidelberg, Germany), ISSN: 0920-8542, 2000
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• Performance assessment of parallel spectral analysis: Towards a practical performance model for parallel medical applications (Frank Munz, Thomas Ludwig, Sibylle Ziegler, Peter Bartenstein, Markus Schwaiger, Arndt Bode), In Future Generation Computer Systems, Series: 16 (5), pp. 553–562, Elsevier Science Publishers B. V. (Amsterdam, The Netherlands), ISSN: 0167-739X, 2000
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• CORBA-basierte verteilte Berechnung medizinischer Bilddaten mit SPM (Marcel May, Frank Munz, Thomas Ludwig), In Bildverarbeitung für die Medizin, Informatik aktuell, pp. 213–217, (Editors: Alexander Horsch, Thomas Lehmann), Springer (Berlin / Heidelberg, Germany), BVM-00, Technical University Munich, Munich, Germany, ISBN: 3-540-67123-4, 2000
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• Interoperability Support in Distributed On-Line Monitoring Systems (Jörg Trinitis, Vaidy Sunderam, Thomas Ludwig, Roland Wismüller), In Proceedings of High Performance Computing and Networking - 8th International Conference, Lecture Notes in Computer Science (1823), pp. 261–269, (Editors: Marian Bubak, Hamideh Afsarmanesh, Bob Hertzberger, Roy Williams), Springer (Berlin / Heidelberg, Germany), HPCN-00, University of Amsterdam, Amsterdam, The Netherlands, 2000
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• Airport simulation using CORBA and DIS (Günther Rackl, Filippo de Stefani, Francois Héran, Antonello Pasquarelli, Thomas Ludwig), In Future Generation Computer Systems, Series: 16 (5), pp. 465–472, Elsevier Science Publishers B. V. (Amsterdam, The Netherlands), ISSN: 0167-739X, 2000
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• Kinetic analysis of functional images: The case for a practical approach to performance prediction (Frank Munz, Thomas Ludwig, Sibylle Ziegler, Peter Bartenstein, Markus Schwaiger, Arndt Bode), In High Performance Computing, Lecture Notes in Computer Science (1615), pp. 169–180, (Editors: Constantine Polychronopoulos, Kazuki Fukuda, Shinji Tomita), Springer (Berlin / Heidelberg, Germany), ISHPC-99, Kyoto, Japan, 1999
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• Towards Monitoring in Parallel and Distributed Environments (Ivan Zoraja, Günther Rackl, Thomas Ludwig), In Proceedings of the International Conference on Software in Telecommunications and Computer Networks, pp. 133–141, SoftCom-99, Faculty of Electrical Engineering, Mechanical Engineering and Naval Architecture, FESB Split, Trieste, Venice, Italy, 1999
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• Synergetic Tool Environments (Thomas Ludwig, Jörg Trinitis, Roland Wismüller), In Parallel Computing Technologies, Lecture Notes in Computer Science (1662), pp. 754–754, (Editors: Victor Malyshkin), Springer (Berlin / Heidelberg, Germany), PaCT-99, Institute of Computational Mathematics and Mathematical Geophysics of the Russian Academy of Sciences (Novosibirsk) and the Electrotechnical University of St.Petersburg, St. Petersburg, Russia, 1999
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Presentation

Abstract Presentation